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phenix.predict_and_build - Structure Prediction and Model Building (Cryo-EM)
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Input files:
  Map: map.mrc
  Sequence: sequence.fa

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AlphaFold Prediction
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Running AlphaFold prediction...
Prediction complete.
Model confidence (pLDDT): 82.5

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Model Docking
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Docking predicted model into map...

Map resolution: 3.2 A
Search method: dock_in_map

Docking score: 0.72
Rotation: 45.2, 128.3, 267.1
Translation: 12.3, -5.6, 8.9

Docking successful.

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Model Refinement
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Quick refinement against map...
Initial CC: 0.58
Final CC: 0.65

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Output Files
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Model: predict_and_build.pdb

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phenix.predict_and_build completed successfully
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